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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12192861_12193992_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12192861 - 12193992
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTTTCCATG
Flanking Amino Acid:
SATWNSVMITFACCGVNGPE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.2
43.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74
0.54
0.8
65.9
36
Minor 5ss
34
-1.8
2.9
42.1
44.4
Minor BPS
48.4
-0.2
2
62.38
40.7

Associated Gene:

Gene:
TSPAN18
Ensembl Gene ID:
ENSAPLG00000006371
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018829
12188522 - 12204559
16038
ENSAPLT00000006633
12188522 - 12238398
49877
ENSAPLT00000027014
12188522 - 12230111
41590