About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12194092_12198896_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12194092 - 12198896
Intron Length:
4805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ACCCTTTGCATT
Flanking Amino Acid:
AILAFIFRENLTREFFTKEL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76
0.59
1
72.6
42.4
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
41.6
-0.5
1.7
51.22
37.9

Associated Gene:

Gene:
TSPAN18
Ensembl Gene ID:
ENSAPLG00000006371
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027014
12188522 - 12230111
41590
ENSAPLT00000018829
12188522 - 12204559
16038
ENSAPLT00000006633
12188522 - 12238398
49877