About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1221008_1221261_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1221008 - 1221261
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TACATATTACTT
Flanking Amino Acid:
PKNLYAANGIGAVLAHKGYF
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
66.4
0.41
1
61.3
37
Major PPT
73.1
0.52
0.8
70.8
29.6
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
46.5
-0.1
1.8
62.32
42

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156