About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1222046_1223073_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1222046 - 1223073
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
TCCTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTCCTTGATT
Flanking Amino Acid:
ILREHPNYVDCYLRLGAMAR
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
75.5
33.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.9
0.58
0.9
73.7
35.6
Minor 5ss
37.7
-1.4
3.2
55.5
42.8
Minor BPS
82.7
1.11
1
90.94
33

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156