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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1224895_1225344_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1224895 - 1225344
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
HLANHFFFKKDYGKVQHLAL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.1
0.72
0.8
82.1
34.6
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156