Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1225453_1228071_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1225453 - 1228071

Intron Length:

2619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCCA

5'SS Class:

strong_major

3'SS Sequence:

ATATTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TACTTGTGAATA

Flanking Amino Acid:

LAVLELNNKEADSIKNGVQL

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

67.6

39.4

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

80.3

0.68

0.8

78.5

35.1

Minor 5ss

27.7

-2.6

2.9

32.8

42.1

Minor BPS

47.8

-0.1

2.1

60.55

39.9

Associated Gene:

Gene:

CTR9

Ensembl Gene ID:

ENSAPLG00000005343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005581

1214007 - 1233162

19156