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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1229618_1230470_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1229618 - 1230470
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
TGTGTCATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTTTTGATT
Flanking Amino Acid:
QSPNNIPALLGKACISFNKK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
35.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.1
0.43
1
63.3
41.8
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
66.5
0.6
1.1
76.82
33.6

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156