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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1231897_1233075_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1231897 - 1233075
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ACTTTATGAAAA
Flanking Amino Acid:
IEIPLRDTDEVIELDFDQLP
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
68.7
41.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82
0.72
0.9
73.4
41.9
Minor 5ss
17.8
-3.7
3.3
23.2
37.2
Minor BPS
48.5
-0.1
1.8
61
38.4

Associated Gene:

Gene:
CTR9
Ensembl Gene ID:
ENSAPLG00000005343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005581
1214007 - 1233162
19156