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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12350342_12352439_R

Intron Information:

Intron Rank:
147331
Intron Class:
major
Intron Phase:
Intron Coordinates:
12350342 - 12352439
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGCTGCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
59.6
0.38
2
77.65
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026598
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033974
12348944 - 12352716
3773