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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12366442_12366685_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12366442 - 12366685
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GTGACCATACTT
Flanking Amino Acid:
SPDVWPVHQQGCMDGVWKWL
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
74.6
0.55
0.8
69.5
30.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
47.9
-0
1.9
66.42
44.2

Associated Gene:

Gene:
CD82
Ensembl Gene ID:
ENSAPLG00000006580
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030851
12364271 - 12381848
17578
ENSAPLT00000006850
12365728 - 12395064
29337