Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12368795_12374279_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12368795 - 12374279

Intron Length:

5485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTACCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

TTTTCTTTACCA

Flanking Amino Acid:

GLVIYFQKEVLRDELSKVVG

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.8

83.1

28.6

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

86.9

0.83

0.8

81.9

34.5

Minor 5ss

33.3

-1.9

3.4

45.9

43.7

Minor BPS

77.3

0.85

1.5

86.93

31.8

Associated Gene:

Gene:

CD82

Ensembl Gene ID:

ENSAPLG00000006580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030851

12364271 - 12381848

17578

ENSAPLT00000006850

12365728 - 12395064

29337