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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12377542_12394893_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12377542 - 12394893
Intron Length:
17352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTCTTACTC
Flanking Amino Acid:
DTAQHSPAQQILGAVILGFG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.9
0.76
0.8
80.9
30.9
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
72.3
0.68
1.5
81.43
33.4

Associated Gene:

Gene:
CD82
Ensembl Gene ID:
ENSAPLG00000006580
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006850
12365728 - 12395064
29337