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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12414242_12414746_F

Intron Information:

Intron Rank:
147314
Intron Class:
major
Intron Phase:
Intron Coordinates:
12414242 - 12414746
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTCTCTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
86
0.81
0.8
83.8
30.7
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
53.7
0.2
1.9
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029344
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035199
12413897 - 12414832
936
ENSAPLT00000029588
12413610 - 12414832
1223