About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12420031_12425238_F

Intron Information:

Intron Rank:
132553
Intron Class:
major
Intron Phase:
Intron Coordinates:
12420031 - 12425238
Intron Length:
5208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGGG
5'SS Class:
major
3'SS Sequence:
TATTTGTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
56.7
42.4
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
82.8
0.74
0.8
80.8
36.5
Minor 5ss
23.2
-3.1
3.2
29.2
43.4
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021231
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047101
12419399 - 12426345
6947