Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12443461_12450198_F

Intron Information:

Intron Rank:

143465

Intron Class:

major

Intron Phase:

Intron Coordinates:

12443461 - 12450198

Intron Length:

6738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGACCC

5'SS Class:

major

3'SS Sequence:

CCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTCAT

U12 Branch Point Sequence:

TCATGCTCAGTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

63.4

41.4

Major BPS

0.65

1.1

77.4

37.3

Major PPT

85.8

0.81

0.7

80.7

24.6

Minor 5ss

31.8

-2.1

3.3

42.8

44.3

Minor BPS

43.2

-0.6

2.1

48.17

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025199

12443415 - 12451247

7833