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Intron Name: Anas_platyrhynchos_platyrhynchos_5_12532704_12552617_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12532704 - 12552617

Intron Length:

19914

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

TTTCCCCAAACA

Flanking Amino Acid:

HNGALQVPCYGKESGLGEAD

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

71.3

0.48

0.9

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

58.8

0.27

77.88

38.5

Associated Gene:

Gene:

ALX4

Ensembl Gene ID:

ENSAPLG00000007118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038782

12529411 - 12556995

27585

ENSAPLT00000007390

12531825 - 12557084

25260