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Intron Name: Anas_platyrhynchos_platyrhynchos_5_12552929_12556494_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12552929 - 12556494

Intron Length:

3566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGGGG

5'SS Class:

major

3'SS Sequence:

CTCTCTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TTGCTCACAGCC

Flanking Amino Acid:

RTDLTEARVQVWFQNRRAKW

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

58.7

46.2

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

77.1

0.61

0.7

69.1

31.5

Minor 5ss

34.2

-1.8

3.6

46.8

48.5

Minor BPS

43.6

-0.5

1.9

56.98

41.3

Associated Gene:

Gene:

ALX4

Ensembl Gene ID:

ENSAPLG00000007118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038782

12529411 - 12556995

27585

ENSAPLT00000007390

12531825 - 12557084

25260