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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12567106_12572219_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12567106 - 12572219
Intron Length:
5114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGGTTCTTAATC
Flanking Amino Acid:
LSLDQTHMVERSECINKFAS
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.8
0.51
0.9
66.1
34.5
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
74.3
0.74
1.2
74.45
36.6

Associated Gene:

Gene:
EXT2
Ensembl Gene ID:
ENSAPLG00000007139
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007439
12566967 - 12634034
67068
ENSAPLT00000001952
12566967 - 12634034
67068