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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12593719_12602877_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12593719 - 12602877
Intron Length:
9159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
YEDWNDPPAVKWSSVSNPLF
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
80
0.75
1
78.6
31
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
EXT2
Ensembl Gene ID:
ENSAPLG00000007139
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007439
12566967 - 12634034
67068