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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12593719_12621301_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12593719 - 12621301
Intron Length:
27583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
QRQIEEMQRQKWSSVSNPLF
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
80
0.75
1
78.6
31
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
EXT2
Ensembl Gene ID:
ENSAPLG00000007139
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001952
12566967 - 12634034
67068