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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12639426_12639644_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12639426 - 12639644
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATGCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AATCCACCAATA
Flanking Amino Acid:
FADKTHRLQLGMQRIRKVLE
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.1
0.61
0.9
70.2
36
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
43.3
-0.5
2
55.57
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007711
12638423 - 12655417
16995
ENSAPLT00000046809
12638423 - 12654080
15658
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623