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Intron Name: Anas_platyrhynchos_platyrhynchos_5_12641028_12641176_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12641028 - 12641176

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GTGTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATAAA

U12 Branch Point Sequence:

TGTGCAATAAAG

Flanking Amino Acid:

RTHVMWGISKDFAVSGIRFG

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

58.5

0.21

1.1

59.9

32.5

Major PPT

82.3

0.73

0.9

76.8

37.3

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

45.5

-0.4

2.1

56.06

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046809

12638423 - 12654080

15658

ENSAPLT00000043489

12638423 - 12654080

15658

ENSAPLT00000020998

12638423 - 12679045

40623

ENSAPLT00000007711

12638423 - 12655417

16995