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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12641223_12642246_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12641223 - 12642246
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
ATGACACTAACT
Flanking Amino Acid:
ATFHSVLGMDRLPDPQRTHV
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
76.1
0.59
0.9
69.8
34.7
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
51.1
0.11
2
73.69
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046809
12638423 - 12654080
15658
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623
ENSAPLT00000007711
12638423 - 12655417
16995