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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12642337_12643045_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12642337 - 12643045
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTTTTGTAACT
Flanking Amino Acid:
ELRDYLEFAKRHELHVIVDE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
69.1
0.68
2
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623
ENSAPLT00000007711
12638423 - 12655417
16995
ENSAPLT00000046809
12638423 - 12654080
15658