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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12643147_12644142_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12643147 - 12644142
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
GCTCTCTTACTA
Flanking Amino Acid:
EKALQDARAEGITVRALILL
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
53.1
0.09
1.6
60.67
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623
ENSAPLT00000007711
12638423 - 12655417
16995
ENSAPLT00000046809
12638423 - 12654080
15658