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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12644221_12644804_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12644221 - 12644804
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CGATGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTTGTATGT
Flanking Amino Acid:
KLVYAYLDSKITGTSTRPFQ
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
73.8
0.54
1
69.4
41.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
46.4
-0.1
2.4
74.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623
ENSAPLT00000007711
12638423 - 12655417
16995
ENSAPLT00000046809
12638423 - 12654080
15658