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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12644903_12645368_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12644903 - 12645368
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCGGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
TGTGGCTGACAA
Flanking Amino Acid:
ALATVLCDPGEAVLIATPFY
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
71.2
0.48
1
61
44.6
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
41.4
-0.6
2.2
54.08
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043489
12638423 - 12654080
15658
ENSAPLT00000020998
12638423 - 12679045
40623
ENSAPLT00000007711
12638423 - 12655417
16995
ENSAPLT00000046809
12638423 - 12654080
15658