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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12647252_12650002_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12647252 - 12650002
Intron Length:
2751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTACTTTTAATG
Flanking Amino Acid:
KLCFDLMSKRLTQTDMNLME
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.6
0.55
0.9
68.2
37.6
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
58.7
0.14
1.3
57.88
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046809
12638423 - 12654080
15658