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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12652074_12655243_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12652074 - 12655243
Intron Length:
3170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
CAAATATTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCTTCCTACTT
Flanking Amino Acid:
MQLWCFSESNMASS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.1
61.7
44.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
65.5
0.35
1
58.3
41.5
Minor 5ss
39.5
-1.2
3
49.5
46.5
Minor BPS
52.9
0.17
1.9
75.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007711
12638423 - 12655417
16995