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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12661951_12662033_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12661951 - 12662033
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTTCT
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GCAGCAGTGATT
Flanking Amino Acid:
MKAHHLRSTWAWSTSFSES
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
0.9
71.9
33.4
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
62.7
0.29
1
60
30.1
Minor 5ss
43.6
-0.7
2.7
55.7
43.9
Minor BPS
40.5
-0.6
2.2
53.06
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007401
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020998
12638423 - 12679045
40623