Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12705013_12711871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12705013 - 12711871

Intron Length:

6859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTGTT

5'SS Class:

major

3'SS Sequence:

TGTTTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAG

U12 Branch Point Sequence:

TGCGTCTTCAGT

Flanking Amino Acid:

TFEMRKKPSPEENGDYTYVE

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.3

72.6

38.9

Major BPS

63.4

0.33

1.6

73.6

41.8

Major PPT

86.4

0.82

0.7

85.4

29.4

Minor 5ss

-1.7

3.4

53.7

43.8

Minor BPS

46.2

-0.2

2.1

63.23

47.2

Associated Gene:

Gene:

ALKBH3

Ensembl Gene ID:

ENSAPLG00000019115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021224

12701879 - 12721250

19372