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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12712082_12715022_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12712082 - 12715022
Intron Length:
2941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
GTGCCGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTATTTACCT
Flanking Amino Acid:
SRITMQPNPNWHPLLTMLKE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
66.7
0.38
1
58.5
41.8
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
61.3
0.43
1.8
80.44
41.7

Associated Gene:

Gene:
ALKBH3
Ensembl Gene ID:
ENSAPLG00000019115
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021224
12701879 - 12721250
19372