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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12715112_12716314_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12715112 - 12716314
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTGATAAAGC
Flanking Amino Acid:
PWGQRTHIRQEMSFEEPRLT
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.8
43.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
32.4
-2
3.6
38.1
46.8
Minor BPS
42.6
-0.5
2.4
58.79
46.4

Associated Gene:

Gene:
ALKBH3
Ensembl Gene ID:
ENSAPLG00000019115
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021224
12701879 - 12721250
19372