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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12717976_12719864_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12717976 - 12719864
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTATATCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATCC
Flanking Amino Acid:
ERKVPEAGVIDKPGMYELST
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
76.6
0.6
0.9
73.9
35.6
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
62.4
0.37
1.9
79.19
36.1

Associated Gene:

Gene:
ALKBH3
Ensembl Gene ID:
ENSAPLG00000019115
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021224
12701879 - 12721250
19372