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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12719900_12721055_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12719900 - 12721055
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
GGTTACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TAGTATTTACCA
Flanking Amino Acid:
KQFVFEKPSEVERKVPEAGV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.3
0.57
0.9
70.3
41
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
53.6
0.11
1.8
65.17
41.3

Associated Gene:

Gene:
ALKBH3
Ensembl Gene ID:
ENSAPLG00000019115
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021224
12701879 - 12721250
19372