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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12724350_12729272_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12724350 - 12729272
Intron Length:
4923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TCTTTCCTACAT
Flanking Amino Acid:
QNTRARASLCRVLCRIMWQQ
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
75.9
0.58
0.9
70.4
34.2
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
49.2
0.02
2
73.24
43.6

Associated Gene:

Gene:
HSD17B12
Ensembl Gene ID:
ENSAPLG00000026765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035386
12722046 - 12770728
48683
ENSAPLT00000031754
12723486 - 12771406
47921
ENSAPLT00000027683
12722046 - 12785491
63446