About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12753455_12766822_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12753455 - 12766822
Intron Length:
13368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAGTTTTTAACT
Flanking Amino Acid:
KNWTRLLVK*RSSMVWKQKL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
72.6
0.79
1.1
78.87
37.4

Associated Gene:

Gene:
HSD17B12
Ensembl Gene ID:
ENSAPLG00000026765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031754
12723486 - 12771406
47921
ENSAPLT00000027683
12722046 - 12785491
63446
ENSAPLT00000035386
12722046 - 12770728
48683