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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12766899_12770638_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12766899 - 12770638
Intron Length:
3740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CCATCCTTATGT
Flanking Amino Acid:
LMGLEKPMQKS*QSVE*RWL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
53.2
0.18
2
68.17
48.4

Associated Gene:

Gene:
HSD17B12
Ensembl Gene ID:
ENSAPLG00000026765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031754
12723486 - 12771406
47921
ENSAPLT00000027683
12722046 - 12785491
63446
ENSAPLT00000035386
12722046 - 12770728
48683