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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12770686_12771405_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12770686 - 12771405
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTGAAGCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
32.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
32.4
-2
2.6
36.4
34.8
Minor BPS
39.7
-0.7
2.4
63.41
46

Associated Gene:

Gene:
HSD17B12
Ensembl Gene ID:
ENSAPLG00000026765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031754
12723486 - 12771406
47921