Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12917417_12919191_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12917417 - 12919191

Intron Length:

1775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTGCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

GTTTGCATGACT

Flanking Amino Acid:

GTRIAKALEKNQTSWVLSSM

Intron Amino Acid Position:

1091

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

81.7

32.2

Major BPS

0.62

1.4

85.7

34.9

Major PPT

84.3

0.77

0.9

80.2

37.3

Minor 5ss

35.2

-1.7

3.5

49.1

47.1

Minor BPS

0.3

2.1

81.31

40.2

Associated Gene:

Gene:

TTC17

Ensembl Gene ID:

ENSAPLG00000007273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007617

12912376 - 12966242

53867

ENSAPLT00000023351

12911388 - 12966242

54855