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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12940972_12941806_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12940972 - 12941806
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTTGG
5'SS Class:
major
3'SS Sequence:
GACTCTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTCCCTGACT
Flanking Amino Acid:
CSRVDLSFQHPEDSLWLVLN
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
62.6
44.4
Major BPS
100
1.24
0.5
100
0
Major PPT
69
0.43
0.9
61.9
34.6
Minor 5ss
40.6
-1
3.1
52.8
44.7
Minor BPS
73.3
0.82
1.6
89.53
34.3

Associated Gene:

Gene:
TTC17
Ensembl Gene ID:
ENSAPLG00000007273
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007617
12912376 - 12966242
53867