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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12941855_12943125_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12941855 - 12943125
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAT
U12 Branch Point Sequence:
GCATCCCTATCT
Flanking Amino Acid:
GAFLNHAMKKSWLRVSCSRV
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
74.3
38
Major BPS
55.5
0.14
1.4
66
40.9
Major PPT
83.1
0.74
0.7
81.8
30.3
Minor 5ss
32.5
-2
3
40.8
45.4
Minor BPS
52
0.14
2
70.59
45.6

Associated Gene:

Gene:
TTC17
Ensembl Gene ID:
ENSAPLG00000007273
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007617
12912376 - 12966242
53867