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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12969878_12970276_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12969878 - 12970276
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
SWKPVQKADASQKRTSEDTT
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
68
0.45
1
57.8
39
Major PPT
82.6
0.73
0.8
82.7
27.5
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
API5
Ensembl Gene ID:
ENSAPLG00000008406
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008742
12968909 - 12981192
12284