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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12970354_12971278_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12970354 - 12971278
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTAATGTTAAAT
Flanking Amino Acid:
ITNNINVLIKDLFHIPPSYK
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
51.1
0.11
2.2
74.62
41.7

Associated Gene:

Gene:
API5
Ensembl Gene ID:
ENSAPLG00000008406
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008742
12968909 - 12981192
12284