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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12971336_12972722_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12971336 - 12972722
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTTTTTTTACA
Flanking Amino Acid:
KTGEALKTEENKIKVVALKI
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
65.3
0.48
1.6
75.28
35.7

Associated Gene:

Gene:
API5
Ensembl Gene ID:
ENSAPLG00000008406
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008742
12968909 - 12981192
12284