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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12973891_12974536_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12973891 - 12974536
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTATCCTTATGT
Flanking Amino Acid:
PVEGVDIQLEVLKLLAEMSS
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.4
0.5
0.9
65.7
40.1
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
59.5
0.38
2
76.5
45.9

Associated Gene:

Gene:
API5
Ensembl Gene ID:
ENSAPLG00000008406
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008742
12968909 - 12981192
12284