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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12974642_12975208_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12974642 - 12975208
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TTTTTTTTTGCA
Flanking Amino Acid:
CTRQAVPLFSKNVHSTKFVT
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
44.6
-0.4
3.5
74.26
38.1

Associated Gene:

Gene:
API5
Ensembl Gene ID:
ENSAPLG00000008406
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008742
12968909 - 12981192
12284