Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_12978464_12981123_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12978464 - 12981123

Intron Length:

2660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGGCGG

5'SS Class:

major

3'SS Sequence:

TTTCCTCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

ATTTTTCTATTT

Flanking Amino Acid:

LADATETAGQHKDAYQAILD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

51.5

46.7

Major BPS

73.8

0.59

1.3

72.8

Major PPT

84.6

0.78

0.7

77.6

31.1

Minor 5ss

23.6

-3

3.2

29.6

43.2

Minor BPS

50.4

0.09

1.8

74.15

37.3

Associated Gene:

Gene:

API5

Ensembl Gene ID:

ENSAPLG00000008406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008742

12968909 - 12981192

12284