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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13149614_13149936_F

Intron Information:

Intron Rank:
148771
Intron Class:
major
Intron Phase:
Intron Coordinates:
13149614 - 13149936
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATGC
5'SS Class:
major
3'SS Sequence:
TATTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTCTTTCAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.9
37.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.3
0.52
1
74.6
33.7
Minor 5ss
43.7
-0.7
3
59.5
45.2
Minor BPS
60.1
0.31
1.9
73.69
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030085
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031895
13149125 - 13150495
1371