Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_13149992_13156396_F

Intron Information:

Intron Rank:

148768

Intron Class:

major

Intron Phase:

Intron Coordinates:

13149992 - 13156396

Intron Length:

6405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGAAT

5'SS Class:

major

3'SS Sequence:

CCTTATATTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTACATTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

73.2

37.1

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

76.5

0.6

0.8

Minor 5ss

40.1

-1.1

3.2

47.4

Minor BPS

0.39

1.6

77.07

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044957

13149861 - 13169265

19405

ENSAPLT00000026488

13149937 - 13179276

29340